Upgrade deps, note use of upstream Clojure

bin/dev

@@ -1,4 +1,4 @@
 #!/usr/bin/env sh
 
 # Run the program without building it
-clojure -M -m core "$@"
+clojure -M:dev "$@"

build.clj

@@ -14,8 +14,6 @@
 
 (defn uber [_]
   (clean nil)
-  (b/copy-dir {:src-dirs ["src" "resources"]
-               :target-dir class-dir})
   (b/copy-dir {:src-dirs ["src" "resources"]
                :target-dir class-dir})
   (b/compile-clj {:basis @basis

deps.edn

@@ -1,10 +1,12 @@
 {:paths ["src" "resources" "private"]  ;; Private is not included in the build
  :deps {
-        org.clojure/clojure {:mvn/version "1.11.1"}
-        org.clojure/data.csv {:mvn/version "1.0.1"}
-        org.clojure/tools.cli {:mvn/version "1.1.230"}}
+        ;; Note that the clojure version below will be installed from upstream
+        ;; rather than using the system version.
+        org.clojure/clojure {:mvn/version "1.12.4"}
+        org.clojure/data.csv {:mvn/version "1.1.1"}
+        org.clojure/tools.cli {:mvn/version "1.3.250"}}
  :aliases
- {:dev {:extra-deps {lambdaisland/deep-diff2 {:mvn/version "2.10.211"}}
+ {:dev {:extra-deps {lambdaisland/deep-diff2 {:mvn/version "2.12.219"}}
         :main-opts ["-m" "core"]
         ;; Saves ~ 1 second of startup time - 1.5 sec on my laptop. After
         ;; building an uberjar and running with these options, it drops to about
@@ -13,5 +15,5 @@
   :test {:extra-deps {lambdaisland/kaocha {:mvn/version "1.87.1366"}}
          :main-opts ["-m" "kaocha.runner"]}
   ;; Run with clj -T:build function-in-build
-  :build {:deps {io.github.clojure/tools.build {:mvn/version "0.9.6"}}
+  :build {:deps {io.github.clojure/tools.build {:mvn/version "0.10.12"}}
           :ns-default build}}}

manifest.scm

@@ -4,9 +4,10 @@
 ;; develop/build the program. Use it with `guix shell --manifest=manifest.scm`.
 (specifications->manifest
  (list
-  ;; No issues running this OpenJDK 21 program on Debian Stable (OpenJDK 17).
+  ;; No issues running this OpenJDK 21 program on Debian Bookworm (OpenJDK 17).
   "openjdk@21:jdk"
   "clojure-tools"
+  "rlwrap"
   "clj-kondo"
   "beancount"
   ))