From dc89a2183969b9c2d6a31b256d9de0d4e20d6818 Mon Sep 17 00:00:00 2001
From: Ben Sturmfels <ben@sturm.com.au>
Date: Tue, 17 Feb 2026 13:11:46 +1100
Subject: [PATCH] Upgrade deps, note use of upstream Clojure

---
 bin/dev      |  2 +-
 build.clj    |  2 --
 deps.edn     | 12 +++++++-----
 manifest.scm |  3 ++-
 4 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/bin/dev b/bin/dev
index cd7dc20..0ab1a49 100755
--- a/bin/dev
+++ b/bin/dev
@@ -1,4 +1,4 @@
 #!/usr/bin/env sh
 
 # Run the program without building it
-clojure -M -m core "$@"
+clojure -M:dev "$@"
diff --git a/build.clj b/build.clj
index 0c10561..56e97b1 100644
--- a/build.clj
+++ b/build.clj
@@ -14,8 +14,6 @@
 
 (defn uber [_]
   (clean nil)
-  (b/copy-dir {:src-dirs ["src" "resources"]
-               :target-dir class-dir})
   (b/copy-dir {:src-dirs ["src" "resources"]
                :target-dir class-dir})
   (b/compile-clj {:basis @basis
diff --git a/deps.edn b/deps.edn
index 3b832ed..27d8d74 100644
--- a/deps.edn
+++ b/deps.edn
@@ -1,10 +1,12 @@
 {:paths ["src" "resources" "private"]  ;; Private is not included in the build
  :deps {
-        org.clojure/clojure {:mvn/version "1.11.1"}
-        org.clojure/data.csv {:mvn/version "1.0.1"}
-        org.clojure/tools.cli {:mvn/version "1.1.230"}}
+        ;; Note that the clojure version below will be installed from upstream
+        ;; rather than using the system version.
+        org.clojure/clojure {:mvn/version "1.12.4"}
+        org.clojure/data.csv {:mvn/version "1.1.1"}
+        org.clojure/tools.cli {:mvn/version "1.3.250"}}
  :aliases
- {:dev {:extra-deps {lambdaisland/deep-diff2 {:mvn/version "2.10.211"}}
+ {:dev {:extra-deps {lambdaisland/deep-diff2 {:mvn/version "2.12.219"}}
         :main-opts ["-m" "core"]
         ;; Saves ~ 1 second of startup time - 1.5 sec on my laptop. After
         ;; building an uberjar and running with these options, it drops to about
@@ -13,5 +15,5 @@
   :test {:extra-deps {lambdaisland/kaocha {:mvn/version "1.87.1366"}}
          :main-opts ["-m" "kaocha.runner"]}
   ;; Run with clj -T:build function-in-build
-  :build {:deps {io.github.clojure/tools.build {:mvn/version "0.9.6"}}
+  :build {:deps {io.github.clojure/tools.build {:mvn/version "0.10.12"}}
           :ns-default build}}}
diff --git a/manifest.scm b/manifest.scm
index 30ab8a8..196ac0f 100644
--- a/manifest.scm
+++ b/manifest.scm
@@ -4,9 +4,10 @@
 ;; develop/build the program. Use it with `guix shell --manifest=manifest.scm`.
 (specifications->manifest
  (list
-  ;; No issues running this OpenJDK 21 program on Debian Stable (OpenJDK 17).
+  ;; No issues running this OpenJDK 21 program on Debian Bookworm (OpenJDK 17).
   "openjdk@21:jdk"
   "clojure-tools"
+  "rlwrap"
   "clj-kondo"
   "beancount"
   ))